Clc sequence viewer import annotation how to#
Clc sequence viewer import annotation manual#
Clc sequence viewer import annotation software#

INTRODUCTION TO CLC SEQUENCE VIEWER Contact information The CLC Sequence Viewer is developed by: CLC bio, a QIAGEN Company Silkeborgvej 2 Prismet 8000 Aarhus C Denmark VAT no.: DK Telephone: Fax: If you have questions or comments regarding the program, you can contact us through the support team as described here: current/index.php?manual=getting_help.html.

Clc sequence viewer import annotation software#

INTRODUCTION TO CLC SEQUENCE VIEWER 9 This software is for research purposes only.ġ0 CHAPTER 1.

Clc sequence viewer import annotation manual#

We strongly encourage you to read this user manual in order to get the best possible basis for working with the software package. Workbenches When the program is installed: Getting started Quick start Import of example data Import of example data Plugins Installing plugins Uninstalling plugins Updating plugins Resources Network configuration The format of the user manual Text formats Latest improvements Welcome to CLC Sequence Viewer a software package supporting your daily bioinformatics work.

Clc sequence viewer import annotation how to#

QIAGEN Aarhus A/S Silkeborgvej 2 Prismet DK-8000 Aarhus C Denmarkģ Contents I Introduction 7 1 Introduction to CLC Sequence Viewer Contact information Download and installation System requirements About CLC Workbenches When the program is installed: Getting started Plugins Network configuration The format of the user manual Latest improvements Tutorials Tutorial: Getting Started Tutorial: View a DNA Sequence Tutorial: Side Panel Settings Tutorial: Align Protein Sequences Tutorial: Find Restriction Sites II Core Functionalities 37 3 User interface Navigation Area View Area Zoom and selection in View AreaĤ CONTENTS Toolbox and Status Bar Workspace List of shortcuts User preferences and settings General preferences Default view preferences Advanced preferences Export/import of preferences View settings for the Side Panel Printing Selecting which part of the view to print Page setup Print preview Import/export of data and graphics Standard import Data export Export graphics to files Export graph data points to a file Copy/paste view output History log Element history Batching and result handling How to handle results of analyses Working with tables III Bioinformatics Viewing and editing sequences View sequence Circular DNAĥ CONTENTS Working with annotations Element information View as text Sequence Lists Viewing structures Importing molecule structure files Viewing molecular structures in 3D Customizing the visualization Snapshots of the molecule visualization Tools for linking sequence and structure Data download GenBank search General sequence analyses Extract sequences Shuffle sequence Sequence statistics Join sequences Nucleotide analyses Convert DNA to RNA Convert RNA to DNA Reverse complements of sequences Reverse sequence Translation of DNA or RNA to protein Find open reading frames Restriction site analyses Dynamic restriction sites Restriction site analysis from the Toolbox Restriction enzyme lists Sequence alignment 175Ħ CONTENTS Create an alignment View alignments Edit alignments Bioinformatics explained: Multiple alignments Phylogenetic trees Phylogenetic tree features Create Trees Tree Settings IV Appendix 198 A More features 199 B Graph preferences 204 C Formats for import and export 206 C.1 List of bioinformatic data formats C.2 List of graphics data formats D Restriction enzymes database configuration 210 E IUPAC codes for amino acids 211 F IUPAC codes for nucleotides 212 Bibliography 213 V Index 215Ĩ Chapter 1 Introduction to CLC Sequence Viewer Contents 1.1 Contact information Download and installation Program download Installation on Microsoft Windows Installation on Mac OS X Installation on Linux with an installer Installation on Linux with an RPM-package System requirements About CLC Workbenches New program feature request Getting help CLC Sequence Viewer vs.

2 Manual for CLC Sequence Viewer Windows, Mac OS X and Linux SeptemThis software is for research purposes only.